IL_7PHC_089

3D structure

PDB id

7PHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PHC_089 not in the Motif Atlas

Geometric match to IL_1S03_004

Geometric discrepancy: 0.2693

The information below is about IL_1S03_004

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.9

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

44

Unit IDs

7PHC|1|3|G|2462
7PHC|1|3|G|2463
*
7PHC|1|3|C|2504
7PHC|1|3|A|2505
7PHC|1|3|C|2506

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L3

Chain l

50S ribosomal protein L16

Chain u

50S ribosomal protein L27