IL_7PHC_109

3D structure

PDB id

7PHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

CGC*GUGG

Length

7 nucleotides

Bulged bases

7PHC|1|4|G|64

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PHC_109 not in the Motif Atlas

Geometric match to IL_6CZR_128

Geometric discrepancy: 0.3204

The information below is about IL_6CZR_128

Detailed Annotation

Single bulged G, near cWW

Broad Annotation

Single bulged G, near cWW

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

7PHC|1|4|C|15
7PHC|1|4|G|16
7PHC|1|4|C|17
*
7PHC|1|4|G|62
7PHC|1|4|U|63
7PHC|1|4|G|64
7PHC|1|4|G|65

Current chains

Chain 4

5S ribosomal RNA

Nearby chains

Chain 3

Large subunit ribosomal RNA; LSU rRNA

Chain d

50S ribosomal protein L5