IL_7PHC_126

3D structure

PDB id

7PHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

AU*AGAAU

Length

7 nucleotides

Bulged bases

7PHC|1|5|A|302

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PHC_126 not in the Motif Atlas

Homologous match to IL_4LFB_013

Geometric discrepancy: 0.554

The information below is about IL_4LFB_013

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_06671.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

11

Unit IDs

7PHC|1|5|A|288
7PHC|1|5|U|289
*
7PHC|1|5|A|300
7PHC|1|5|G|301
7PHC|1|5|A|302
7PHC|1|5|A|303
7PHC|1|5|U|304

Current chains

Chain 5

16S ribosomal RNA

Nearby chains

Chain K

30S ribosomal protein S12

Chain O

30S ribosomal protein S16