IL_7PHC_135

3D structure

PDB id

7PHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

GUG*CGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PHC_135 not in the Motif Atlas

Geometric match to IL_6OL3_002

Geometric discrepancy: 0.1678

The information below is about IL_6OL3_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

7PHC|1|5|G|498
7PHC|1|5|U|499
7PHC|1|5|G|500
*
7PHC|1|5|C|541
7PHC|1|5|G|542
7PHC|1|5|C|543

Current chains

Chain 5

16S ribosomal RNA

Nearby chains

Chain C

30S ribosomal protein S4

Chain K

30S ribosomal protein S12