IL_7PHC_200

3D structure

PDB id

7PHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

UUAAA*UGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PHC_200 not in the Motif Atlas

Homologous match to IL_9DFE_074

Geometric discrepancy: 0.3413

The information below is about IL_9DFE_074

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

UAA/GAN with extra stack

Motif group

IL_89021.4

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

8

Unit IDs

7PHC|1|3|U|1858
7PHC|1|3|U|1859
7PHC|1|3|A|1860
7PHC|1|3|A|1861
7PHC|1|3|A|1862
*
7PHC|1|3|U|1894
7PHC|1|3|G|1895
7PHC|1|3|A|1896
7PHC|1|3|A|1897
7PHC|1|3|G|1898

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 8

Transfer RNA; tRNA