IL_7PHC_223

3D structure

PDB id

7PHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

GUUG*CGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PHC_223 not in the Motif Atlas

Geometric match to IL_9M86_006

Geometric discrepancy: 0.3671

The information below is about IL_9M86_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32983.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

7PHC|1|5|G|1415
7PHC|1|5|U|1416
7PHC|1|5|U|1417
7PHC|1|5|G|1418
*
7PHC|1|5|C|1434
7PHC|1|5|G|1435
7PHC|1|5|C|1436

Current chains

Chain 5

16S ribosomal RNA

Nearby chains

Chain S

30S ribosomal protein S20

Chain o

50S ribosomal protein L19