IL_7PHC_235

3D structure

PDB id

7PHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

CUUAU*AUUUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PHC_235 not in the Motif Atlas

Geometric match to IL_8S95_002

Geometric discrepancy: 0.3535

The information below is about IL_8S95_002

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

18

Unit IDs

7PHC|1|5|C|122
7PHC|1|5|U|123
7PHC|1|5|U|124
7PHC|1|5|A|125
7PHC|1|5|U|126
*
7PHC|1|5|A|219
7PHC|1|5|U|220
7PHC|1|5|U|221
7PHC|1|5|U|222
7PHC|1|5|G|223

Current chains

Chain 5

16S ribosomal RNA

Nearby chains

Chain O

30S ribosomal protein S16

Chain S

30S ribosomal protein S20