IL_7PHC_238

3D structure

PDB id

7PHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

GGU*AUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PHC_238 not in the Motif Atlas

Geometric match to IL_7ECK_015

Geometric discrepancy: 0.3698

The information below is about IL_7ECK_015

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

7PHC|1|5|G|599
7PHC|1|5|G|600
7PHC|1|5|U|601
*
7PHC|1|5|A|632
7PHC|1|5|U|633
7PHC|1|5|U|634

Current chains

Chain 5

16S ribosomal RNA

Nearby chains

Chain G

30S ribosomal protein S8

Chain P

30S ribosomal protein S17