IL_7PIA_015

3D structure

PDB id

7PIA (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

13.6 Å

Loop

Sequence

UGA*UUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIA_015 not in the Motif Atlas

Geometric match to IL_6OL3_002

Geometric discrepancy: 0.229

The information below is about IL_6OL3_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

7PIA|1|3|U|624
7PIA|1|3|G|625
7PIA|1|3|A|626
*
7PIA|1|3|U|699
7PIA|1|3|U|700
7PIA|1|3|A|701

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L35

Chain c

50S ribosomal protein L4

Chain k

50S ribosomal protein L15