IL_7PIA_035

3D structure

PDB id

7PIA (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

13.6 Å

Loop

Sequence

UCCCCAAA*UA

Length

10 nucleotides

Bulged bases

7PIA|1|3|C|1044

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIA_035 not in the Motif Atlas

Geometric match to IL_7V9E_001

Geometric discrepancy: 0.2366

The information below is about IL_7V9E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.2

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

7PIA|1|3|U|1040
7PIA|1|3|C|1041
7PIA|1|3|C|1042
7PIA|1|3|C|1043
7PIA|1|3|C|1044
7PIA|1|3|A|1045
7PIA|1|3|A|1046
7PIA|1|3|A|1047
*
7PIA|1|3|U|1185
7PIA|1|3|A|1186

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain i

50S ribosomal protein L13

Chain p

50S ribosomal protein L20