IL_7PIA_036

3D structure

PDB id

7PIA (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

13.6 Å

Loop

Sequence

CUAAGUG*CUAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIA_036 not in the Motif Atlas

Homologous match to IL_4WF9_039

Geometric discrepancy: 0.4205

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

7PIA|1|3|C|1053
7PIA|1|3|U|1054
7PIA|1|3|A|1055
7PIA|1|3|A|1056
7PIA|1|3|G|1057
7PIA|1|3|U|1058
7PIA|1|3|G|1059
*
7PIA|1|3|C|1175
7PIA|1|3|U|1176
7PIA|1|3|A|1177
7PIA|1|3|A|1178
7PIA|1|3|G|1179

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L36

Chain e

50S ribosomal protein L6

Chain i

50S ribosomal protein L13