IL_7PIA_038

3D structure

PDB id

7PIA (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

13.6 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

7PIA|1|3|U|1068

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIA_038 not in the Motif Atlas

Geometric match to IL_3NJ7_003

Geometric discrepancy: 0.3899

The information below is about IL_3NJ7_003

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

7PIA|1|3|G|1066
7PIA|1|3|A|1067
7PIA|1|3|U|1068
7PIA|1|3|G|1069
*
7PIA|1|3|C|1156
7PIA|1|3|G|1157
7PIA|1|3|C|1158

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L36

Chain l

50S ribosomal protein L16