IL_7PIA_040

3D structure

PDB id

7PIA (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

13.6 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

7PIA|1|3|A|1123

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIA_040 not in the Motif Atlas

Geometric match to IL_5D8H_003

Geometric discrepancy: 0.2947

The information below is about IL_5D8H_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

7PIA|1|3|G|1122
7PIA|1|3|A|1123
7PIA|1|3|G|1124
7PIA|1|3|U|1125
7PIA|1|3|G|1126
*
7PIA|1|3|C|1135
7PIA|1|3|U|1136
7PIA|1|3|C|1137

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L36

Chain g

50S ribosomal protein L10

Chain h

50S ribosomal protein L11