IL_7PIA_096

3D structure

PDB id

7PIA (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

13.6 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

7PIA|1|3|G|2584, 7PIA|1|3|A|2585

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIA_096 not in the Motif Atlas

Geometric match to IL_5TBW_095

Geometric discrepancy: 0.3145

The information below is about IL_5TBW_095

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

7PIA|1|3|C|2518
7PIA|1|3|U|2519
7PIA|1|3|C|2520
*
7PIA|1|3|G|2582
7PIA|1|3|U|2583
7PIA|1|3|G|2584
7PIA|1|3|A|2585
7PIA|1|3|G|2586

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L3

Chain y

50S ribosomal protein L32