IL_7PIA_099

3D structure

PDB id

7PIA (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

13.6 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

7PIA|1|3|A|2610

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIA_099 not in the Motif Atlas

Geometric match to IL_5TBW_113

Geometric discrepancy: 0.3503

The information below is about IL_5TBW_113

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

7PIA|1|3|C|2599
7PIA|1|3|G|2600
*
7PIA|1|3|C|2609
7PIA|1|3|A|2610
7PIA|1|3|G|2611

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 7

Transfer RNA; tRNA

Chain a

50S ribosomal protein L2

Chain u

50S ribosomal protein L27