IL_7PIA_109
3D structure
- PDB id
- 7PIA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 13.6 Å
Loop
- Sequence
- CAGG*CUGAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7PIA_109 not in the Motif Atlas
- Geometric match to IL_5J7L_353
- Geometric discrepancy: 0.3995
- The information below is about IL_5J7L_353
- Detailed Annotation
- Multiple bulged bases with non-canonical cWW
- Broad Annotation
- Multiple bulged bases with non-canonical cWW
- Motif group
- IL_64231.5
- Basepair signature
- cWW-cWW-L-R-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
7PIA|1|3|C|2847
7PIA|1|3|A|2848
7PIA|1|3|G|2849
7PIA|1|3|G|2850
*
7PIA|1|3|C|2874
7PIA|1|3|U|2875
7PIA|1|3|G|2876
7PIA|1|3|A|2877
7PIA|1|3|G|2878
Current chains
- Chain 3
- 23S ribosomal RNA
Nearby chains
- Chain m
- 50S ribosomal protein L17
- Chain o
- 50S ribosomal protein L19
Coloring options: