IL_7PIA_128

3D structure

PDB id

7PIA (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

13.6 Å

Loop

Sequence

GAC*GC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIA_128 not in the Motif Atlas

Geometric match to IL_4WF9_007

Geometric discrepancy: 0.1763

The information below is about IL_4WF9_007

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

48

Unit IDs

7PIA|1|5|G|316
7PIA|1|5|A|317
7PIA|1|5|C|318
*
7PIA|1|5|G|328
7PIA|1|5|C|329

Current chains

Chain 5

16S ribosomal RNA

Nearby chains

Chain S

30S ribosomal protein S20