IL_7PIB_061

3D structure

PDB id

7PIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UGCCAAA*UGAUGUAUA

Length

16 nucleotides

Bulged bases

7PIB|1|3|C|1808, 7PIB|1|3|U|1823, 7PIB|1|3|U|1827

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIB_061 not in the Motif Atlas

Geometric match to IL_4WF9_069

Geometric discrepancy: 0.2204

The information below is about IL_4WF9_069

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7PIB|1|3|U|1805
7PIB|1|3|G|1806
7PIB|1|3|C|1807
7PIB|1|3|C|1808
7PIB|1|3|A|1809
7PIB|1|3|A|1810
7PIB|1|3|A|1811
*
7PIB|1|3|U|1820
7PIB|1|3|G|1821
7PIB|1|3|A|1822
7PIB|1|3|U|1823
7PIB|1|3|G|1824
7PIB|1|3|U|1825
7PIB|1|3|A|1826
7PIB|1|3|U|1827
7PIB|1|3|A|1828

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 5

Small subunit ribosomal RNA; SSU rRNA

Chain a

50S ribosomal protein L2