IL_7PIB_074

3D structure

PDB id

7PIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

7PIB|1|3|G|2246

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIB_074 not in the Motif Atlas

Geometric match to IL_7A0S_077

Geometric discrepancy: 0.171

The information below is about IL_7A0S_077

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_87316.3

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

7PIB|1|3|U|2088
7PIB|1|3|A|2089
7PIB|1|3|G|2090
*
7PIB|1|3|U|2244
7PIB|1|3|G|2245
7PIB|1|3|G|2246
7PIB|1|3|G|2247

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 8

Transfer RNA; tRNA

Chain a

50S ribosomal protein L2

Chain v

50S ribosomal protein L28