IL_7PIB_088

3D structure

PDB id

7PIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CUGA*UGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIB_088 not in the Motif Atlas

Geometric match to IL_7RQB_093

Geometric discrepancy: 0.2081

The information below is about IL_7RQB_093

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

8

Unit IDs

7PIB|1|3|C|2464
7PIB|1|3|U|2465
7PIB|1|3|G|2466
7PIB|1|3|A|2467
*
7PIB|1|3|U|2501
7PIB|1|3|G|2502
7PIB|1|3|G|2503

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 7

Transfer RNA; tRNA

Chain l

50S ribosomal protein L16

Chain u

50S ribosomal protein L27