IL_7PIB_109
3D structure
- PDB id
- 7PIB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GUUCC*GAACC
- Length
- 10 nucleotides
- Bulged bases
- 7PIB|1|4|U|33
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7PIB_109 not in the Motif Atlas
- Geometric match to IL_5NS3_002
- Geometric discrepancy: 0.2177
- The information below is about IL_5NS3_002
- Detailed Annotation
- Symmetric double minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.13
- Basepair signature
- cWW-cSH-cWS-L-tSW-R-R-cWW
- Number of instances in this motif group
- 13
Unit IDs
7PIB|1|4|G|32
7PIB|1|4|U|33
7PIB|1|4|U|34
7PIB|1|4|C|35
7PIB|1|4|C|36
*
7PIB|1|4|G|42
7PIB|1|4|A|43
7PIB|1|4|A|44
7PIB|1|4|C|45
7PIB|1|4|C|46
Current chains
- Chain 4
- 5S ribosomal RNA
Nearby chains
- Chain 3
- Large subunit ribosomal RNA; LSU rRNA
- Chain d
- 50S ribosomal protein L5
- Chain n
- 50S ribosomal protein L18
- Chain x
- 50S ribosomal protein L31
Coloring options: