IL_7PIB_116

3D structure

PDB id

7PIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CUACC*GAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIB_116 not in the Motif Atlas

Homologous match to IL_6CZR_120

Geometric discrepancy: 0.2078

The information below is about IL_6CZR_120

Detailed Annotation

Minor groove platform related

Broad Annotation

Minor groove platform related

Motif group

IL_64231.4

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

12

Unit IDs

7PIB|1|5|C|118
7PIB|1|5|U|119
7PIB|1|5|A|120
7PIB|1|5|C|121
7PIB|1|5|C|122
*
7PIB|1|5|G|223
7PIB|1|5|A|224
7PIB|1|5|U|225
7PIB|1|5|G|226

Current chains

Chain 5

16S ribosomal RNA

Nearby chains

Chain O

30S ribosomal protein S16

Chain S

30S ribosomal protein S20