IL_7PIB_123

3D structure

PDB id

7PIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UUU*GA

Length

5 nucleotides

Bulged bases

7PIB|1|5|U|364

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIB_123 not in the Motif Atlas

Homologous match to IL_4LFB_014

Geometric discrepancy: 0.2442

The information below is about IL_4LFB_014

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

170

Unit IDs

7PIB|1|5|U|363
7PIB|1|5|U|364
7PIB|1|5|U|365
*
7PIB|1|5|G|388
7PIB|1|5|A|389

Current chains

Chain 5

16S ribosomal RNA

Nearby chains

Chain 9

Elongation factor G

Chain O

30S ribosomal protein S16