IL_7PIB_127

3D structure

PDB id

7PIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

AUUU*AUUUU

Length

9 nucleotides

Bulged bases

7PIB|1|5|U|488

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIB_127 not in the Motif Atlas

Geometric match to IL_5TBW_041

Geometric discrepancy: 0.3453

The information below is about IL_5TBW_041

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

7PIB|1|5|A|438
7PIB|1|5|U|439
7PIB|1|5|U|440
7PIB|1|5|U|441
*
7PIB|1|5|A|487
7PIB|1|5|U|488
7PIB|1|5|U|489
7PIB|1|5|U|490
7PIB|1|5|U|491

Current chains

Chain 5

16S ribosomal RNA

Nearby chains

Chain C

30S ribosomal protein S4