IL_7PIB_128
3D structure
- PDB id
- 7PIB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GGAAG*CUGUAC
- Length
- 11 nucleotides
- Bulged bases
- 7PIB|1|5|G|482
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7PIB_128 not in the Motif Atlas
- Homologous match to IL_4LFB_018
- Geometric discrepancy: 0.4513
- The information below is about IL_4LFB_018
- Detailed Annotation
- 6x5 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_82100.1
- Basepair signature
- cWW-tWW-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
7PIB|1|5|G|443
7PIB|1|5|G|444
7PIB|1|5|A|445
7PIB|1|5|A|446
7PIB|1|5|G|447
*
7PIB|1|5|C|480
7PIB|1|5|U|481
7PIB|1|5|G|482
7PIB|1|5|U|483
7PIB|1|5|A|484
7PIB|1|5|C|485
Current chains
- Chain 5
- 16S ribosomal RNA
Nearby chains
- Chain 9
- Elongation factor G
- Chain C
- 30S ribosomal protein S4
- Chain O
- 30S ribosomal protein S16
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