IL_7PIB_220

3D structure

PDB id

7PIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UGA*UACA

Length

7 nucleotides

Bulged bases

7PIB|1|5|A|1369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIB_220 not in the Motif Atlas

Geometric match to IL_8CRE_464

Geometric discrepancy: 0.3505

The information below is about IL_8CRE_464

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

95

Unit IDs

7PIB|1|5|U|916
7PIB|1|5|G|917
7PIB|1|5|A|918
*
7PIB|1|5|U|1368
7PIB|1|5|A|1369
7PIB|1|5|C|1370
7PIB|1|5|A|1371

Current chains

Chain 5

16S ribosomal RNA

Nearby chains

Chain D

30S ribosomal protein S5