IL_7PIB_222

3D structure

PDB id

7PIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIB_222 not in the Motif Atlas

Homologous match to IL_5J7L_057

Geometric discrepancy: 0.252

The information below is about IL_5J7L_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

7PIB|1|5|C|1277
7PIB|1|5|G|1278
7PIB|1|5|G|1279
7PIB|1|5|A|1280
7PIB|1|5|U|1281
7PIB|1|5|U|1282
*
7PIB|1|5|A|1303
7PIB|1|5|U|1304
7PIB|1|5|G|1305
7PIB|1|5|A|1306
7PIB|1|5|A|1307
7PIB|1|5|G|1308

Current chains

Chain 5

16S ribosomal RNA

Nearby chains

Chain L

30S ribosomal protein S13