IL_7PIR_007

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

UGAAGUG*CUCAGUAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIR_007 not in the Motif Atlas

Geometric match to IL_4V9F_006

Geometric discrepancy: 0.2115

The information below is about IL_4V9F_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.4

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

7PIR|1|3|U|192
7PIR|1|3|G|193
7PIR|1|3|A|194
7PIR|1|3|A|195
7PIR|1|3|G|196
7PIR|1|3|U|197
7PIR|1|3|G|198
*
7PIR|1|3|C|205
7PIR|1|3|U|206
7PIR|1|3|C|207
7PIR|1|3|A|208
7PIR|1|3|G|209
7PIR|1|3|U|210
7PIR|1|3|A|211
7PIR|1|3|G|212

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 8

Transfer RNA; tRNA

Chain k

50S ribosomal protein L15

Chain v

50S ribosomal protein L28