IL_7PIR_012

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

GACUU*AUAC

Length

9 nucleotides

Bulged bases

7PIR|1|3|A|315

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIR_012 not in the Motif Atlas

Geometric match to IL_5TBW_041

Geometric discrepancy: 0.3378

The information below is about IL_5TBW_041

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

7PIR|1|3|G|314
7PIR|1|3|A|315
7PIR|1|3|C|316
7PIR|1|3|U|317
7PIR|1|3|U|318
*
7PIR|1|3|A|390
7PIR|1|3|U|391
7PIR|1|3|A|392
7PIR|1|3|C|393

Current chains

Chain 3

23S ribosomal RNA

Nearby chains