IL_7PIR_016

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

AGAG*UGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIR_016 not in the Motif Atlas

Geometric match to IL_1SAQ_002

Geometric discrepancy: 0.2247

The information below is about IL_1SAQ_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.13

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

7PIR|1|3|A|571
7PIR|1|3|G|572
7PIR|1|3|A|573
7PIR|1|3|G|574
*
7PIR|1|3|U|587
7PIR|1|3|G|588
7PIR|1|3|A|589
7PIR|1|3|U|590

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain i

50S ribosomal protein L13

Chain p

50S ribosomal protein L20