IL_7PIR_032

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

AUAAG*CGAAU

Length

10 nucleotides

Bulged bases

7PIR|1|3|A|1191

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIR_032 not in the Motif Atlas

Geometric match to IL_5J7L_277

Geometric discrepancy: 0.249

The information below is about IL_5J7L_277

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

7PIR|1|3|A|1034
7PIR|1|3|U|1035
7PIR|1|3|A|1036
7PIR|1|3|A|1037
7PIR|1|3|G|1038
*
7PIR|1|3|C|1188
7PIR|1|3|G|1189
7PIR|1|3|A|1190
7PIR|1|3|A|1191
7PIR|1|3|U|1192

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain p

50S ribosomal protein L20

Chain q

50S ribosomal protein L21