IL_7PIR_036

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

7PIR|1|3|U|1068

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIR_036 not in the Motif Atlas

Geometric match to IL_4WF9_034

Geometric discrepancy: 0.3533

The information below is about IL_4WF9_034

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

7PIR|1|3|G|1066
7PIR|1|3|A|1067
7PIR|1|3|U|1068
7PIR|1|3|G|1069
*
7PIR|1|3|C|1156
7PIR|1|3|G|1157
7PIR|1|3|C|1158

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L36

Chain e

50S ribosomal protein L6

Chain l

50S ribosomal protein L16