IL_7PIR_039

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

7PIR|1|3|A|1123

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIR_039 not in the Motif Atlas

Geometric match to IL_5D8H_003

Geometric discrepancy: 0.3754

The information below is about IL_5D8H_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

26

Unit IDs

7PIR|1|3|G|1122
7PIR|1|3|A|1123
7PIR|1|3|G|1124
7PIR|1|3|U|1125
7PIR|1|3|G|1126
*
7PIR|1|3|C|1135
7PIR|1|3|U|1136
7PIR|1|3|C|1137

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L36

Chain g

50S ribosomal protein L10

Chain h

50S ribosomal protein L11