IL_7PIR_044

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

GUUU*AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIR_044 not in the Motif Atlas

Geometric match to IL_4V9F_050

Geometric discrepancy: 0.2619

The information below is about IL_4V9F_050

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.3

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

36

Unit IDs

7PIR|1|3|G|1338
7PIR|1|3|U|1339
7PIR|1|3|U|1340
7PIR|1|3|U|1341
*
7PIR|1|3|A|1637
7PIR|1|3|C|1638

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L34

Chain s

50S ribosomal protein L23