IL_7PIR_050

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

GAAG*CAUGC

Length

9 nucleotides

Bulged bases

7PIR|1|3|U|1593

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIR_050 not in the Motif Atlas

Geometric match to IL_6CF2_001

Geometric discrepancy: 0.3637

The information below is about IL_6CF2_001

Detailed Annotation

Non canonical cWW and near pair

Broad Annotation

Non canonical cWW and near pair

Motif group

IL_28284.1

Basepair signature

cWW-cWW-tWW-cWW

Number of instances in this motif group

3

Unit IDs

7PIR|1|3|G|1460
7PIR|1|3|A|1461
7PIR|1|3|A|1462
7PIR|1|3|G|1463
*
7PIR|1|3|C|1591
7PIR|1|3|A|1592
7PIR|1|3|U|1593
7PIR|1|3|G|1594
7PIR|1|3|C|1595

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain a

50S ribosomal protein L2