IL_7PIR_052

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

UAAG*UGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIR_052 not in the Motif Atlas

Geometric match to IL_6E7L_002

Geometric discrepancy: 0.3231

The information below is about IL_6E7L_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_69065.2

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

7PIR|1|3|U|1501
7PIR|1|3|A|1502
7PIR|1|3|A|1503
7PIR|1|3|G|1504
*
7PIR|1|3|U|1539
7PIR|1|3|G|1540
7PIR|1|3|A|1541
7PIR|1|3|G|1542

Current chains

Chain 3

23S ribosomal RNA

Nearby chains