IL_7PIR_060

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

CGUAAG*CGAGAAG

Length

13 nucleotides

Bulged bases

7PIR|1|3|G|1733

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIR_060 not in the Motif Atlas

Geometric match to IL_4V9F_063

Geometric discrepancy: 0.2781

The information below is about IL_4V9F_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_20700.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

11

Unit IDs

7PIR|1|3|C|1720
7PIR|1|3|G|1721
7PIR|1|3|U|1722
7PIR|1|3|A|1723
7PIR|1|3|A|1724
7PIR|1|3|G|1725
*
7PIR|1|3|C|1730
7PIR|1|3|G|1731
7PIR|1|3|A|1732
7PIR|1|3|G|1733
7PIR|1|3|A|1734
7PIR|1|3|A|1735
7PIR|1|3|G|1736

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 5

Small subunit ribosomal RNA; SSU rRNA

Chain a

50S ribosomal protein L2