IL_7PIR_062

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

UGCCAAA*UGAUGUAUA

Length

16 nucleotides

Bulged bases

7PIR|1|3|C|1808, 7PIR|1|3|U|1823, 7PIR|1|3|U|1827

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIR_062 not in the Motif Atlas

Geometric match to IL_4WF9_069

Geometric discrepancy: 0.294

The information below is about IL_4WF9_069

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7PIR|1|3|U|1805
7PIR|1|3|G|1806
7PIR|1|3|C|1807
7PIR|1|3|C|1808
7PIR|1|3|A|1809
7PIR|1|3|A|1810
7PIR|1|3|A|1811
*
7PIR|1|3|U|1820
7PIR|1|3|G|1821
7PIR|1|3|A|1822
7PIR|1|3|U|1823
7PIR|1|3|G|1824
7PIR|1|3|U|1825
7PIR|1|3|A|1826
7PIR|1|3|U|1827
7PIR|1|3|A|1828

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 5

Small subunit ribosomal RNA; SSU rRNA

Chain a

50S ribosomal protein L2