IL_7PIR_068

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

AG*UUU

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIR_068 not in the Motif Atlas

Geometric match to IL_7A0S_054

Geometric discrepancy: 0.2941

The information below is about IL_7A0S_054

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

48

Unit IDs

7PIR|1|3|A|1868
7PIR|1|3|G|1869
*
7PIR|1|3|U|1887
7PIR|1|3|U|1888
7PIR|1|3|U|1889

Current chains

Chain 3

23S ribosomal RNA

Nearby chains