IL_7PIR_070

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

GC*GCUU

Length

6 nucleotides

Bulged bases

7PIR|1|3|C|1972, 7PIR|1|3|U|1973

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIR_070 not in the Motif Atlas

Geometric match to IL_7V9E_001

Geometric discrepancy: 0.2422

The information below is about IL_7V9E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.2

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

7PIR|1|3|G|1940
7PIR|1|3|C|1941
*
7PIR|1|3|G|1971
7PIR|1|3|C|1972
7PIR|1|3|U|1973
7PIR|1|3|U|1974

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 6

Transfer RNA; tRNA