IL_7PIR_086

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

GGUA*UUC

Length

7 nucleotides

Bulged bases

7PIR|1|3|G|2211

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIR_086 not in the Motif Atlas

Geometric match to IL_4PCJ_001

Geometric discrepancy: 0.292

The information below is about IL_4PCJ_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_68118.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

31

Unit IDs

7PIR|1|3|G|2210
7PIR|1|3|G|2211
7PIR|1|3|U|2212
7PIR|1|3|A|2213
*
7PIR|1|3|U|2227
7PIR|1|3|U|2228
7PIR|1|3|C|2229

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain a

50S ribosomal protein L2

Chain f

50S ribosomal protein L9

Chain v

50S ribosomal protein L28