IL_7PIR_105

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

GAUAAA*UGAAAC

Length

12 nucleotides

Bulged bases

7PIR|1|3|A|2773

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIR_105 not in the Motif Atlas

Geometric match to IL_4V9F_096

Geometric discrepancy: 0.3787

The information below is about IL_4V9F_096

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

7PIR|1|3|G|2745
7PIR|1|3|A|2746
7PIR|1|3|U|2747
7PIR|1|3|A|2748
7PIR|1|3|A|2749
7PIR|1|3|A|2750
*
7PIR|1|3|U|2770
7PIR|1|3|G|2771
7PIR|1|3|A|2772
7PIR|1|3|A|2773
7PIR|1|3|A|2774
7PIR|1|3|C|2775

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L36

Chain e

50S ribosomal protein L6

Chain i

50S ribosomal protein L13