IL_7PIR_111

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

GAAACAC*GUUAAGC

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIR_111 not in the Motif Atlas

Geometric match to IL_4LFB_048

Geometric discrepancy: 0.3531

The information below is about IL_4LFB_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89862.2

Basepair signature

cWW-L-tHS-L-R-L-cWW-L

Number of instances in this motif group

7

Unit IDs

7PIR|1|4|G|22
7PIR|1|4|A|23
7PIR|1|4|A|24
7PIR|1|4|A|25
7PIR|1|4|C|26
7PIR|1|4|A|27
7PIR|1|4|C|28
*
7PIR|1|4|G|52
7PIR|1|4|U|53
7PIR|1|4|U|54
7PIR|1|4|A|55
7PIR|1|4|A|56
7PIR|1|4|G|57
7PIR|1|4|C|58

Current chains

Chain 4

5S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L5

Chain n

50S ribosomal protein L18