IL_7PIR_128

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

UUA*UGAAUA

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIR_128 not in the Motif Atlas

Geometric match to IL_4WF9_092

Geometric discrepancy: 0.3569

The information below is about IL_4WF9_092

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

7PIR|1|5|U|436
7PIR|1|5|U|437
7PIR|1|5|A|438
*
7PIR|1|5|U|491
7PIR|1|5|G|492
7PIR|1|5|A|493
7PIR|1|5|A|494
7PIR|1|5|U|495
7PIR|1|5|A|496

Current chains

Chain 5

16S ribosomal RNA

Nearby chains

Chain C

30S ribosomal protein S4