IL_7PIR_131

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

GAAUGACU*AGUUUGAC

Length

16 nucleotides

Bulged bases

7PIR|1|5|A|449

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIR_131 not in the Motif Atlas

Homologous match to IL_6CZR_131

Geometric discrepancy: 0.52

The information below is about IL_6CZR_131

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30149.1

Basepair signature

cWW-L-R-L-R-tWH-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

7PIR|1|5|G|447
7PIR|1|5|A|448
7PIR|1|5|A|449
7PIR|1|5|U|450
7PIR|1|5|G|451
7PIR|1|5|A|452
7PIR|1|5|C|453
7PIR|1|5|U|454
*
7PIR|1|5|A|473
7PIR|1|5|G|474
7PIR|1|5|U|475
7PIR|1|5|U|476
7PIR|1|5|U|477
7PIR|1|5|G|478
7PIR|1|5|A|479
7PIR|1|5|C|480

Current chains

Chain 5

16S ribosomal RNA

Nearby chains

Chain O

30S ribosomal protein S16