IL_7PIR_149

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

GGGG*CUU

Length

7 nucleotides

Bulged bases

7PIR|1|5|G|921

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIR_149 not in the Motif Atlas

Geometric match to IL_6IA2_001

Geometric discrepancy: 0.1746

The information below is about IL_6IA2_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

7PIR|1|5|G|920
7PIR|1|5|G|921
7PIR|1|5|G|922
7PIR|1|5|G|923
*
7PIR|1|5|C|1364
7PIR|1|5|U|1365
7PIR|1|5|U|1366

Current chains

Chain 5

16S ribosomal RNA

Nearby chains

Chain D

30S ribosomal protein S5

Chain F

30S ribosomal protein S7