IL_7PIR_157

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

CCAGC*GUGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIR_157 not in the Motif Atlas

Homologous match to IL_5J7L_056

Geometric discrepancy: 0.2699

The information below is about IL_5J7L_056

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

7PIR|1|5|C|1234
7PIR|1|5|C|1235
7PIR|1|5|A|1236
7PIR|1|5|G|1237
7PIR|1|5|C|1238
*
7PIR|1|5|G|1247
7PIR|1|5|U|1248
7PIR|1|5|G|1249
7PIR|1|5|A|1250
7PIR|1|5|G|1251

Current chains

Chain 5

16S ribosomal RNA

Nearby chains