IL_7PIR_162

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

CAA*UAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIR_162 not in the Motif Atlas

Geometric match to IL_2W2H_002

Geometric discrepancy: 0.2897

The information below is about IL_2W2H_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_19557.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

7PIR|1|5|C|1382
7PIR|1|5|A|1383
7PIR|1|5|A|1384
*
7PIR|1|5|U|1466
7PIR|1|5|A|1467
7PIR|1|5|A|1468
7PIR|1|5|G|1469

Current chains

Chain 5

16S ribosomal RNA

Nearby chains

Chain 3

Large subunit ribosomal RNA; LSU rRNA

Chain 6

Transfer RNA; tRNA

Chain K

30S ribosomal protein S12