IL_7PIR_182

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

7PIR|1|3|G|2246

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIR_182 not in the Motif Atlas

Homologous match to IL_5J7L_325

Geometric discrepancy: 0.3516

The information below is about IL_5J7L_325

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_85599.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

9

Unit IDs

7PIR|1|3|U|2088
7PIR|1|3|A|2089
7PIR|1|3|G|2090
*
7PIR|1|3|U|2244
7PIR|1|3|G|2245
7PIR|1|3|G|2246
7PIR|1|3|G|2247

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 8

Transfer RNA; tRNA

Chain a

50S ribosomal protein L2

Chain v

50S ribosomal protein L28