IL_7PIR_187

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

AUA*UGUUU

Length

8 nucleotides

Bulged bases

7PIR|1|3|U|2499

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIR_187 not in the Motif Atlas

Homologous match to IL_9DFE_094

Geometric discrepancy: 0.413

The information below is about IL_9DFE_094

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36931.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

26

Unit IDs

7PIR|1|3|A|2467
7PIR|1|3|U|2468
7PIR|1|3|A|2469
*
7PIR|1|3|U|2497
7PIR|1|3|G|2498
7PIR|1|3|U|2499
7PIR|1|3|U|2500
7PIR|1|3|U|2501

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 6

Transfer RNA; tRNA

Chain l

50S ribosomal protein L16